Sequence Assembly with CodonCode Aligner

CodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection. Features include:

• Multiple sequence assembly and sequence alignment algorithms
• Manual and automated sequence editing
• Align contigs to each other and get back to the underlying trace data with a simple double-click
• Reference sequences, difference tables, and phylogenetic trees
• Sensitive mutation detection
• Advanced methods for heterozygous indel analysis
• Automation tools: assemble by name & scripting
• Virtual cloning, RFLP analysis, Primer design

CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable.