DNA Sequence Assembly, Alignment, and Analysis with CodonCode Aligner
CodonCode Aligner offers powerful tools for DNA sequence assembly, alignment, and analysis. Designed for researchers and labs, it streamlines cloning verification, sequence editing, and sequencing result analysis.
CodonCode Aligner helps you complete key DNA sequencing tasks quickly and accurately, including:
- Sequence assembly and contig editing
- Multiple and pairwise sequence alignments
- Compare sequence and find mutations
- Virtual cloning and clone verification
- Primer design support
- Restriction map generation and RFLP analysis
CodonCode Aligner brings powerful sequence assembly and analysis capabilities together in a reliable, easy-to-use software solution trusted by researchers worldwide.
Get A Free Trial
Download CodonCode Aligner and get a fully
functional 30-day trial. No forms to fill out.
Learn More
- Watch the video introduction to Aligner
- Look at the tutorials
- More about CodonCode Aligner
- See how CodonCode Aligner can accelerate your DNA sequence analysis in Evolution research

- Visit the CodonCode Aligner Learning Center.
What's New
CodonCode Aligner 13.0
is now available
New features in version 13:
Clone verification
HiFi DNA Assembly
Cloning histories
NGS mutation detection
and more...
More details can be found here

