CodonCode Corporation provides leading software packages for DNA sequence assembly, sequence alignment, and mutation detection. Our products include:
CodonCode Aligner
CodonCode Aligner is an easy-to-use program for DNA sequence analysis for Windows and Mac OS X.
Features include:
- Multiple sequence assembly and sequence alignment algorithms
- Manual and automated sequence editing
- Align contigs to each other and get back to the underlying trace data with a simple double-click
- Reference sequences and difference tables
- Sensitive mutation detection
- Advanced methods for heterozygous indel analysis
- Automation tools: assemble by name & scripting
- Restriction cloning
- Gibson Assembly
- RFLP analysis
- Primer design
- Restriction mapping & virtual gels
- Phylogenetic trees
- Sequence translation
- and more...
CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable, and does not require a subscription.
Licenses are available for stand alone computers or can be shared between computers with the Aligner License Server. There is no price difference, but for concurrent licenses the number of users at the same time is determined by the amount of licenses purchased, and a network connection between your local computers is necessary. The Aligner License Server is hosted on your own computers and your own network, so there is no data security issue from using a web based server you know nothing about.
After downloading the free CodonCode Aligner trial, we suggest you look at the introduction video to learn about Aligner's main features.
Phred - Phrap
Phred & Phrap - the all important tools for base calling and sequence assembly developed by Phil Green and coworkers at the University of Washington. Phred and Phrap are available from within CodonCode Aligner to offer an easily accessible user interface to these programs.
