CodonCode Aligner Tutorials

From this page, you can view tutorials for CodonCode Aligner.

Recommended for new users:

Specific Features in CodonCode Aligner:

Advanced Features and Customization:

New Features added in recent CodonCode Aligner versions:

Aligner License Server:


    For additional information about specific features, you can use the help available within CodonCode Aligner ("Help" menu -> "Aligner Help..."). This help is also available as a PDF file, which is installed automatically in the same folder where CodonCode Aligner is installed.

    For help with mutation finding in CodonCode Aligner, please visit (please note that this help is slightly outdated, so some dialogs etc. may look different in current CodonCode Aligner versions).


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