CodonCode Aligner
CodonCode Aligner is an easy-to-use program for DNA sequence analysis on Windows and Mac OS X.
CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable, and does not require a subscription. Details about pricing and purchasing can be found here .
After downloading the free CodonCode Aligner trial, we suggest you look at the introduction video to learn about Aligner's main features.
Curious what the program looks like? Check out some screen shots.
Licenses are available for stand alone computers or can be shared between computers with the Aligner License Server. There is no price difference, but for concurrent licenses the number of users at the same time is determined by the amount of licenses purchased, and a network connection between your local computers is necessary. The Aligner License Server is hosted on your own computers and your own network, so there is no data security issue from using a web based server you know nothing about.
Features include:
- Multiple sequence assembly and sequence alignment algorithms
- Manual and automated sequence editing
- Align contigs to each other and get back to the underlying trace data with a simple double-click to verify discrepancies
- Reference sequences and difference tables
- Sensitive mutation detection and dvanced methods for heterozygous indel analysis
- Automation tools: assemble by name & scripting
- Virtual cloning: plan your restriction cloning or Gibson Assembly experiment and view sequence maps
- Primer design
- Restriction mapping & virtual gels, and RFLP analysis
- Phylogenetic trees
- Sequence translation, highlighting of start and stop codons
- and more...
